Chloroplast DNA variation in Populus. I. Intraspecific restriction fragment diversity within Populus deltoides, P. nigra and P. maximowiczii.
Identifieur interne : 004A93 ( Main/Exploration ); précédent : 004A92; suivant : 004A94Chloroplast DNA variation in Populus. I. Intraspecific restriction fragment diversity within Populus deltoides, P. nigra and P. maximowiczii.
Auteurs : O P Rajora [Canada] ; B P DancikSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 0040-5752 ] ; 1995.
Abstract
We examined intraspecific chloroplast (cp) DNA variation within Populus deltoides, P. nigra, and P. maximowiczii by restriction fragment analysis using 16 restriction endonucleases and six heterologous probes of cloned Petunia cpDNA fragments. All three Populus species showed intraspecific cpDNA variation, which was intra- and inter-varietal in P. deltoides, intervarietal in P. nigra, and origin-specific in P. maximowiczii. Two varieties of P. deltoides, var deltoides and var occidentalis, showed distinct cp genomes/DNA. Three distinct cp genomes/DNA, separated by a loss or gain of 1 EcoRV restriction site and/or 1 restriction fragment length polymorphism (RFLP), were observed among the individuals of P. deltoides var deltoides. Within P. nigra, cpDNA of var italica was distinct from that of vars nigra and plantierensis by one RFLP and by a loss or gain of one BamHI restriction site. Populus maximowiczii clones of Chinese origin were separated from those of Japanese origin by a gain or loss of one ClaI restriction site in their cpDNA. The estimate of nucleotide substitutions per site in cpDNA was 0.07% between two varieties of P. deltoides, 0.05% between var italica and var nigra or plantierensis of P. nigra, and 0.01% between Japanese and Chinese accessions of P. maximowiczii.
DOI: 10.1007/BF00221971
PubMed: 24173919
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Intraspecific restriction fragment diversity within Populus deltoides, P. nigra and P. maximowiczii.</title><author><name sortKey="Rajora, O P" sort="Rajora, O P" uniqKey="Rajora O" first="O P" last="Rajora">O P Rajora</name><affiliation wicri:level="1"><nlm:affiliation>Department of Renewable Resources, University of Alberta, T6G 2H1, Edmonton, Alberta, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Renewable Resources, University of Alberta, T6G 2H1, Edmonton, Alberta</wicri:regionArea><wicri:noRegion>Alberta</wicri:noRegion></affiliation></author><author><name sortKey="Dancik, B P" sort="Dancik, B P" uniqKey="Dancik B" first="B P" last="Dancik">B P Dancik</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="1995">1995</date><idno type="RBID">pubmed:24173919</idno><idno type="pmid">24173919</idno><idno type="doi">10.1007/BF00221971</idno><idno type="wicri:Area/Main/Corpus">004A96</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">004A96</idno><idno type="wicri:Area/Main/Curation">004A96</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">004A96</idno><idno type="wicri:Area/Main/Exploration">004A96</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Chloroplast DNA variation in Populus. I. Intraspecific restriction fragment diversity within Populus deltoides, P. nigra and P. maximowiczii.</title><author><name sortKey="Rajora, O P" sort="Rajora, O P" uniqKey="Rajora O" first="O P" last="Rajora">O P Rajora</name><affiliation wicri:level="1"><nlm:affiliation>Department of Renewable Resources, University of Alberta, T6G 2H1, Edmonton, Alberta, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Renewable Resources, University of Alberta, T6G 2H1, Edmonton, Alberta</wicri:regionArea><wicri:noRegion>Alberta</wicri:noRegion></affiliation></author><author><name sortKey="Dancik, B P" sort="Dancik, B P" uniqKey="Dancik B" first="B P" last="Dancik">B P Dancik</name></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="ISSN">0040-5752</idno><imprint><date when="1995" type="published">1995</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We examined intraspecific chloroplast (cp) DNA variation within Populus deltoides, P. nigra, and P. maximowiczii by restriction fragment analysis using 16 restriction endonucleases and six heterologous probes of cloned Petunia cpDNA fragments. All three Populus species showed intraspecific cpDNA variation, which was intra- and inter-varietal in P. deltoides, intervarietal in P. nigra, and origin-specific in P. maximowiczii. Two varieties of P. deltoides, var deltoides and var occidentalis, showed distinct cp genomes/DNA. Three distinct cp genomes/DNA, separated by a loss or gain of 1 EcoRV restriction site and/or 1 restriction fragment length polymorphism (RFLP), were observed among the individuals of P. deltoides var deltoides. Within P. nigra, cpDNA of var italica was distinct from that of vars nigra and plantierensis by one RFLP and by a loss or gain of one BamHI restriction site. Populus maximowiczii clones of Chinese origin were separated from those of Japanese origin by a gain or loss of one ClaI restriction site in their cpDNA. The estimate of nucleotide substitutions per site in cpDNA was 0.07% between two varieties of P. deltoides, 0.05% between var italica and var nigra or plantierensis of P. nigra, and 0.01% between Japanese and Chinese accessions of P. maximowiczii. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">24173919</PMID><DateCompleted><Year>2013</Year><Month>11</Month><Day>01</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0040-5752</ISSN><JournalIssue CitedMedium="Print"><Volume>90</Volume><Issue>3-4</Issue><PubDate><Year>1995</Year><Month>Mar</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Chloroplast DNA variation in Populus. I. Intraspecific restriction fragment diversity within Populus deltoides, P. nigra and P. maximowiczii.</ArticleTitle><Pagination><MedlinePgn>317-23</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/BF00221971</ELocationID><Abstract><AbstractText>We examined intraspecific chloroplast (cp) DNA variation within Populus deltoides, P. nigra, and P. maximowiczii by restriction fragment analysis using 16 restriction endonucleases and six heterologous probes of cloned Petunia cpDNA fragments. All three Populus species showed intraspecific cpDNA variation, which was intra- and inter-varietal in P. deltoides, intervarietal in P. nigra, and origin-specific in P. maximowiczii. Two varieties of P. deltoides, var deltoides and var occidentalis, showed distinct cp genomes/DNA. Three distinct cp genomes/DNA, separated by a loss or gain of 1 EcoRV restriction site and/or 1 restriction fragment length polymorphism (RFLP), were observed among the individuals of P. deltoides var deltoides. Within P. nigra, cpDNA of var italica was distinct from that of vars nigra and plantierensis by one RFLP and by a loss or gain of one BamHI restriction site. Populus maximowiczii clones of Chinese origin were separated from those of Japanese origin by a gain or loss of one ClaI restriction site in their cpDNA. The estimate of nucleotide substitutions per site in cpDNA was 0.07% between two varieties of P. deltoides, 0.05% between var italica and var nigra or plantierensis of P. nigra, and 0.01% between Japanese and Chinese accessions of P. maximowiczii. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rajora</LastName><ForeName>O P</ForeName><Initials>OP</Initials><AffiliationInfo><Affiliation>Department of Renewable Resources, University of Alberta, T6G 2H1, Edmonton, Alberta, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dancik</LastName><ForeName>B P</ForeName><Initials>BP</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>1994</Year><Month>08</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>1994</Year><Month>08</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>11</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>1995</Year><Month>3</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>1995</Year><Month>3</Month><Day>1</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24173919</ArticleId><ArticleId IdType="doi">10.1007/BF00221971</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Genome. 1993 Feb;36(1):87-93</Citation><ArticleIdList><ArticleId IdType="pubmed">18469973</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1983 May;65(3):181-9</Citation><ArticleIdList><ArticleId IdType="pubmed">24263412</ArticleId></ArticleIdList></Reference><Reference><Citation>Evolution. 1986 Nov;40(6):1248-1261</Citation><ArticleIdList><ArticleId IdType="pubmed">28563508</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1992 Jul;84(3-4):280-5</Citation><ArticleIdList><ArticleId IdType="pubmed">24203184</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1995 Mar;90(3-4):324-30</Citation><ArticleIdList><ArticleId IdType="pubmed">24173920</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Canada</li></country></list><tree><noCountry><name sortKey="Dancik, B P" sort="Dancik, B P" uniqKey="Dancik B" first="B P" last="Dancik">B P Dancik</name></noCountry><country name="Canada"><noRegion><name sortKey="Rajora, O P" sort="Rajora, O P" uniqKey="Rajora O" first="O P" last="Rajora">O P Rajora</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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